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For First Nations people, effects of European contact are recorded in the genome

UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN—A study of the genomes of 25 individuals who lived 1,000 to 6,000 years ago on the north coast of present-day British Columbia, and 25 of their descendants who still live in the region today, opens a new window on the catastrophic consequences of European colonization for indigenous peoples in that part of the world.

The study is reported in the journal Nature Communications.

“This is the first genome-wide study – where we have population-level data, not just a few individuals – that spans 6,000 years,” said University of Illinois anthropology professor Ripan Malhi, who co-led the new research with former graduate student John Lindo (now a postdoctoral researcher at the University of Chicago) and Pennsylvania State University biology professor Michael DeGiorgio.

The research team included members and representatives of the Canadian aboriginal communities of the Lax Kw’alaams and Metlakatla First Nation, Coast Tsimshian people whose oral histories indicate they have lived in the region for millennia. A previous study by Malhi and representatives of these First Nations showed a direct maternal link between ancient individuals buried in the region and the indigenous people living there today, an ancestry long claimed by the Metlakatla First Nation, one of the groups that participated in the study.

The new study confirms the previous findings by analyzing the exome, the entire collection of genes that contribute to a person’s traits.

“Oral traditions and archaeological evidence to date have shown that there has been continuous aboriginal occupation of this region for more than 9,000 years. This study adds another layer of scientific data linking the actual ancestral human remains to their modern descendants through their DNA over a span of 6,000 years,” said Barbara Petzelt, an author of the study and a liaison to the Metlakatla community. “It’s exciting to see how this tool of DNA science adds to the larger picture of Coast Tsimshian pre- and post-contact history – without the taint of historic European observer bias.”

In the new study, the team found that variants of an immune-related gene that were beneficial to many of those living in the region before European contact proved disadvantageous once the Europeans arrived.

The human leukocyte antigen gene family, known as HLA, contributes to the body’s ability to recognize and respond to pathogens. The gene identified in the study belongs to the HLA-DQ subfamily, which “has been associated with a variety of colonization-era infectious diseases, including measles and tuberculosis, and with the adaptive immune response to the vaccinia virus, which is an attenuated form of smallpox,” the authors wrote.

The genomes of a majority of the ancient individuals contained alleles, or variants, of the HLA-DQ gene that differed from the variants that today are common in their descendants, the researchers found.

Statistical analyses revealed that the ancient variants were under “positive selection” before European contact. This means that those variants helped the native peoples survive and thrive in northwest North America.

However, those same HLA-DQ alleles suffered a dramatic decline in the indigenous population about the time the Europeans arrived, the researchers found.

“The modern individuals show a marked decrease in the frequency of the associated alleles,” the researchers wrote.

“One of the alleles is 64 percent less common today than it was before European contact, which is a dramatic decline,” Lindo said.

Further analyses pointed to a steep population decline among the ancestors of modern Coast Tsimshian, a “reduction in effective population size of 57 percent,” the researchers reported. This dramatic die-off occurred roughly 175 years ago, about the time that European diseases were sweeping through native groups in that part of North America.

“First Nations history mainly consists of oral stories passed from generation to generation. Our oral history tells of the deaths of a large percentage of our population by diseases from the European settlers.

Smallpox, for our area, was particularly catastrophic,” said Joycelynn Mitchell, a Metlakatla co-author on the study. “We are pleased to have scientific evidence that corroborates our oral history. As technology continues to advance, we expect that science will continue to agree with the stories of our ancestors.”

The researchers tested several other hypotheses that might explain the dramatic decline of those ancient alleles.

“The only scenario compatible with this stark change in diversity is negative selection, suggesting that previously advantageous HLA-gene variants became disadvantageous, possibly contributing to the population decline that occurred upon European contact,” DeGiorgio said.

“We knew the history of this group through archaeological evidence, oral histories and written histories,” Malhi said. “And now we also know it through genomic data.”

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Partners from Canada’s northwest coast, from left, Barbara Petzelt, Harold Leighton, Bill Pahl, Wendy Pahl, Yvonne Ryan and Joycelynn Mitchell, collaborated with an international team of researchers on a genetic study of First Nations peoples—both present day and ancient. Photo courtesy the Metlakatla First Nation

Article Source: University of Illinoise at Ubana-Champaign news release.

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Egyptian giant crocodile mummy is full of surprises

A three-metre-long mummified Egyptian ‘giant crocodile’, one of the finest animal mummies in the Dutch National Museum of Antiquities (Rijksmuseum van Oudheden), turns out to be literally filled with surprises. Examination of detailed new 3D CT scans has led to the conclusion that, besides the two crocodiles previously spotted inside the wrappings, the mummy also contains dozens of individually wrapped baby crocodiles. This is an exceptional discovery: there are only a few known crocodile mummies of this kind anywhere in the world. Starting on 18 November, museum visitors can perform a virtual autopsy on the 3,000-year-old mummy, using an interactive visualisation exhibit in the new Egyptian galleries.

Virtual autopsy in museum galleries

A new scan of the large crocodile mummy was recently performed at the Academic Medical Centre (AMC) in Amsterdam. An earlier CT scan in 1996 had shown that there are two juvenile crocodiles inside a mummy that looks like one large crocodile. The Swedish company Interspectral, which specializes in high-tech interactive 3D visualizations, has converted the results of the new scan into a spectacular 3D application and thus detected the dozens of baby crocodiles. Starting on 18 November, museum visitors can perform an interactive virtual autopsy on the crocodile mummy and the mummy of an Egyptian priest. On a large touch screen, they can examine the mummies layer by layer, learning about their age, physical features, and the mummification process. The amulets placed inside the linen wrappings with the mummies can also be examined in detail and from all sides in 3D.

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Mummy and scan results of ancient Egyptian crocodile mummy with baby crocodiles. Courtesy Interspectral and  Rijksmuseum van Oudheden/National Museum of Antiquities

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Crocodile mummy undergoing scanning. Courtesy Mike Bink 

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A surprise

The museum’s Egyptologists suspect that the crocodiles of different ages were mummified together as a reference to the ancient Egyptian belief in rejuvenation and new life after death. Another possibility is that no large crocodiles were available at a time when they were needed as offerings to the gods. The mummy was given the shape of one large crocodile with various kinds of stuffing: bits of wood, wads of linen, plant stems, and rope.

The ancient Egyptians mummified all sorts of animals, usually to pay homage to a particular deity that could manifest in animal form. For instance, crocodiles were offered to the god Sobek.
The museum’s curator are excited about this remarkable find: ‘What was intended as a tool for museum visitors, has yet produced new scientific insights. When we started work on this project, we weren’t really expecting any new discoveries. After all, the mummy had already been scanned. It was a big surprise that so many baby crocodiles could be detected with high- tech 3D scans and this interactive visualization.’ 

Source: Rijksmuseum van Oudheden/National Museum of Antiquities press release.

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 This richly illustrated issue includes the following stories: Recent findings shedding new light on the whereabouts of the remains of Philip of Macedon, father of Alexander the Great; how an archaeologist-sculptor is bringing bones of the dead back to life; archaeologists uncovering town life at the dawn of civilization; an exclusive interview with internationally acclaimed archaeologist James M. Adovasio about what makes the Meadowcroft Rockshelter prominent in the ongoing search for the first Americans; what archaeologists are finding at the site of the ancient city of Gath, the home town of the biblical Philistine giant, Goliath; and how scientists are redrawing the picture of human evolution in Europe.  Find it on Amazon.com.

 

 

  

 

 

 

 

Underwater Stone Age settlement mapped out

LUND UNIVERSITY—Seven years ago divers discovered the oldest known stationary fish traps in northern Europe off the coast of southern Sweden. Since then, researchers at Lund University in Sweden have uncovered an exceptionally well-preserved Stone Age site. They now believe the location was a lagoon environment where Mesolithic humans lived during parts of the year.

Other spectacular finds include a 9,000 year-old pick axe made out of elk antlers. The discoveries indicate mass fishing and therefore a semi-permanent settlement.

“As geologists, we want to recreate this area and understand how it looked. Was it warm or cold? How did the environment change over time?” says Anton Hansson, PhD student in Quaternary geology at Lund University.

Changes in the sea level have allowed the findings to be preserved deep below the surface of Hanö Bay in the Baltic Sea.

The researchers have drilled into the seabed and radiocarbon dated the core, as well as examined pollen and diatoms. They have also produced a bathymetrical map that reveals depth variations.

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 The underwater site was once a lagoon about 9,000 years ago. Still screen shot from video, shown below.

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 Mesolithic period fishtraps found at the site. Still screen shot from video, shown below.

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 A 9,000-year-old pick axe made out of elk antlers, found at the site. Still screen shot from video, shown below.

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“These sites have been known, but only through scattered finds. We now have the technology for more detailed interpretations of the landscape”, says Anton Hansson.

“If you want to fully understand how humans dispersed from Africa, and their way of life, we also have to find all their settlements. Quite a few of these are currently underwater, since the sea level is higher today than during the last glaciation. Humans have always prefered coastal sites”, concludes Hansson.

Source: Lund University press release.

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 This richly illustrated issue includes the following stories: Recent findings shedding new light on the whereabouts of the remains of Philip of Macedon, father of Alexander the Great; how an archaeologist-sculptor is bringing bones of the dead back to life; archaeologists uncovering town life at the dawn of civilization; an exclusive interview with internationally acclaimed archaeologist James M. Adovasio about what makes the Meadowcroft Rockshelter prominent in the ongoing search for the first Americans; what archaeologists are finding at the site of the ancient city of Gath, the home town of the biblical Philistine giant, Goliath; and how scientists are redrawing the picture of human evolution in Europe.  Find it on Amazon.com.

 

 

  

 

 

 

 

Potato domestication in the Andes

Researchers provide evidence for the early cultivation and use of potato (Solanum tuberosum) at an archaeological site in the Andes Mountains of south-central Peru.  Studying the domestication of the potato, an important crop in the high Andes, could help illuminate the development of highland Andean culture, but limited direct botanical evidence of potato domestication in the region has hindered research efforts. Claudia Rumold and Mark Aldenderfer* collected microbotanical samples from groundstone tools from Jisakairumoko, a site situated in the western Titicaca Basin of Peru that reflects a transition from sedentism to food production. On 14 groundstone tools, the authors found 141 starch microremains, and microscope photographs and subsequent taxonomic identification revealed that 50 of the starch granules were of Solanum origin. The potato starches were similar in size to modern potato starches, and anthropogenic wear on the starches was consistent with culinary processing methods. The findings might help us understand the development of food production in Jisakaurumoko, and more broadly, illuminate plant domestication and cultivation in the Andes Mountains.

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 Findings may help illuminate understanding of plant domestication and cultivation in the Andes Mountains. Josue Hermoza, Wikimedia Commons 

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Source: Proceedings of the National Academy of Sciences press release.

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*“Late Archaic–Early Formative period microbotanical evidence for potato at Jiskairumoko in the Titicaca Basin of southern Peru,” by Claudia Rumold and Mark Aldenderfer.

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winter2016ebookcover

 This richly illustrated issue includes the following stories: Recent findings shedding new light on the whereabouts of the remains of Philip of Macedon, father of Alexander the Great; how an archaeologist-sculptor is bringing bones of the dead back to life; archaeologists uncovering town life at the dawn of civilization; an exclusive interview with internationally acclaimed archaeologist James M. Adovasio about what makes the Meadowcroft Rockshelter prominent in the ongoing search for the first Americans; what archaeologists are finding at the site of the ancient city of Gath, the home town of the biblical Philistine giant, Goliath; and how scientists are redrawing the picture of human evolution in Europe.  Find it on Amazon.com.

 

 

  

 

 

 

 

Neolithic dairy production in the Mediterranean

An archeological study* finds regional differences in the level of dairy-related activity in early Neolithic farming communities across the Mediterranean region. Previous research suggests that the production of dairy products such as milk in Neolithic Mediterranean communities could have been an impetus for animal domestication. To study the rise of dairy production in the Mediterranean region, Mélanie Roffet-Salque and colleagues analyzed lipid residues on more than 550 ceramic sherds and osteo-archeological data on age-at-death for domesticated animals from 82 sites in the northern Mediterranean and Near East that dated between the seventh and fifth millennia BC. In combination with previously published data, the ceramic and osteo-archaeological analyses revealed regional differences in the level of dairy-related activity in Early Neolithic farming communities across the Mediterranean region. Moreover, milk residues in ceramic artifacts from both the east and west of the region contrasted with data from sites in northern Greece, where high frequencies of pig bones indicated a reliance on meat production. According to the authors, except for parts of mainland Greece, dairy production was likely practiced across the Mediterranean region from the onset of agriculture and might have contributed to the spread of culture and animal domestication in the region.

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dairycowsmartinabegglen

 Dairy-related activity differed across regions in Neolithic culture and may have impacted culture spread and animal domestication. Martin Abegglen, Wikimedia Commons

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Source: Proceedings of the National Academy of Sciences press release. 

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*“Regional asynchronicity in dairy production and processing in early farming communities of the northern Mediterranean,” by Cynthianne Debono Spiteri et al.

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winter2016ebookcover

 This richly illustrated issue includes the following stories: Recent findings shedding new light on the whereabouts of the remains of Philip of Macedon, father of Alexander the Great; how an archaeologist-sculptor is bringing bones of the dead back to life; archaeologists uncovering town life at the dawn of civilization; an exclusive interview with internationally acclaimed archaeologist James M. Adovasio about what makes the Meadowcroft Rockshelter prominent in the ongoing search for the first Americans; what archaeologists are finding at the site of the ancient city of Gath, the home town of the biblical Philistine giant, Goliath; and how scientists are redrawing the picture of human evolution in Europe.  Find it on Amazon.com.

 

 

  

 

 

 

 

Neanderthal inheritance helped humans adapt to life outside of Africa

CELL PRESS—As the ancestors of modern humans made their way out of Africa to other parts of the world many thousands of years ago, they met up and in some cases had children with other forms of humans, including the Neanderthals and Denisovans. Scientists know this because traces of those meetings remain in the human genome. Now, researchers reporting in the Cell Press journal Current Biology on November 10 find more evidence that those encounters have benefited humans over the years.

All told, the new study* identifies 126 different places in the genome where genes inherited from those archaic humans remain at unusually high frequency in the genomes of modern humans around the world. We owe our long-lost hominid relatives for various traits, and especially those related to our immune systems and skin, the evidence shows.

“Our work shows that hybridization was not just some curious side note to human history, but had important consequences and contributed to our ancestors’ ability to adapt to different environments as they dispersed throughout the world,” says Joshua Akey of University of Washington School of Medicine in Seattle.

Akey says it’s relatively straightforward today to identify sequences that were inherited from archaic ancestors. Studies show that non-African individuals inherited about 2% of their genomes from Neanderthals. People of Melanesian ancestry inherited another 2% to 4% of their genomes from Denisovan ancestors. But it hasn’t been clear what influence those DNA sequences have had on our biology, traits, and evolutionary history.

In the new study, the researchers took advantage of recently constructed genome-scale maps of Neanderthal and Denisovan sequences identified in more than 1,500 geographically diverse people. Their sample included close to 500 individuals each from East Asia, Europe, and South Asia. They also analyzed the genomes of 27 individuals from Island Melanesia, an area including Indonesia, New Guinea, Fiji, and Vanuatu. The researchers were searching for archaic DNA sequences in those human genomes at frequencies much higher than would be expected if those genes weren’t doing people any good.

While the vast majority of surviving Neanderthal and Denisovan sequences are found at relatively low frequencies (typically less than 5%), the new analyses turned up 126 places in our genomes where these archaic sequences exist at much higher frequencies, reaching up to about 65%. Seven of those regions were found in parts of the genome known to play a role in characteristics of our skin. Another 31 are involved in immunity.

“The ability to increase to such high population frequencies was most likely facilitated because these sequences were advantageous,” Akey explains. “In addition, many of the high-frequency sequences span genes involved in the immune system, which is a frequent target of adaptive evolution.”

Generally speaking, the genes humans got from Neanderthals or Denisovans are important for our interactions with the environment. The evidence suggests that hybridization with archaic humans as our ancient ancestors made their way out of Africa “was an efficient way for modern humans to quickly adapt to the new environments they were encountering.”

The researchers say they’d now like to learn more about how these genes influenced humans’ ability to survive and what implications they might have for disease. They are also interested in expanding their analysis to include geographically diverse populations in other parts of the world, including Africa.

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 Above: Artist’s depiction of Le Moustier Neanderthals, AMNH. Wikimedia Commons

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Article Source: Cell Press news release

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*Current Biology, Gittelman et al.: “Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments” 

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winter2016ebookcover

 This richly illustrated issue includes the following stories: Recent findings shedding new light on the whereabouts of the remains of Philip of Macedon, father of Alexander the Great; how an archaeologist-sculptor is bringing bones of the dead back to life; archaeologists uncovering town life at the dawn of civilization; an exclusive interview with internationally acclaimed archaeologist James M. Adovasio about what makes the Meadowcroft Rockshelter prominent in the ongoing search for the first Americans; what archaeologists are finding at the site of the ancient city of Gath, the home town of the biblical Philistine giant, Goliath; and how scientists are redrawing the picture of human evolution in Europe.  Find it on Amazon.com.

 

 

  

 

 

 

 

Evolution purged many Neanderthal genes from human genome

PLOS—Neanderthal genetic material is found in only small amounts in the genomes of modern humans because, after interbreeding, natural selection removed large numbers of weakly deleterious Neanderthal gene variants, according to a study* by Ivan Juric and colleagues at the University of California, Davis, published November 8th, 2016 in PLOS Genetics.

Humans and Neanderthals interbred tens of thousands of years ago, but today, Neanderthal DNA makes up only 1-4% of the genomes of modern non-African people. To understand how modern humans lost their Neanderthal genetic material and how humans and Neanderthals remained distinct, Juric and colleagues developed a novel method for estimating the average strength of natural selection against Neanderthal genetic material. They found that natural selection removed many Neanderthal alleles from the genome that might have had mildly negative effects. The scientists estimate that these gene variations were able to persist in Neanderthals because Neanderthals had a much smaller population size than humans. Once transferred into the human genome, however, these alleles became subject to natural selection, which was more effective in the larger human populations and has removed these gene variants over time.

The study is one of the first attempts to quantify the strength of natural selection against Neanderthal genes. It enhances the understanding of how Neanderthals contributed to human genomes (along with Harris and Nielsen, Genetics 2016). It also confirms previous reports that East Asian people had somewhat higher initial levels of Neanderthal ancestry than Europeans. These findings shed new light on the role of population size on losing or maintaining Neanderthal ancestry in humans, and add to our understanding of our close relatives – the Neanderthals.

Of the study, Ivan Juric says: “For a while now we have known that humans and Neanderthals hybridized. Many Europeans and Asians-along with other non-African populations-are the descendants of those hybrids. Previous work has also shown that, following hybridization, many Neanderthal gene variants were lost from the modern human population due to selection. We wanted to better understand the causes of this loss. Our results are compatible with a scenario where the Neanderthal genome accumulated many weakly deleterious variants, because selection was not effective in the small Neanderthal populations. Those variants entered the human population after hybridization. Once in the larger human population, those deleterious variants were slowly purged by natural selection.

The key finding of our study therefore is that the current levels of Neanderthal ancestry in modern humans are in part due to long-term differences in human and Neanderthal population sizes. The human population size has historically been much larger, and this is important since selection is more efficient at removing deleterious variants in large populations. Therefore, weakly deleterious variants that could persist in Neanderthals could not persist in humans. We think that this simple explanation can account for the pattern of Neanderthal ancestry that we see today along the genome of modern humans.

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 Evolution purged many Neanderthal genes from the human genome.  Jaysmark, Flickr, CC BY

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From our study, we cannot conclude that differences in demography explain everything. For instance, genes that were deleterious only in human-Neanderthal hybrids might have existed, and sexual selection or other forms of selection against hybrids could have been very important processes during human-Neanderthal hybridization. Still, I find it fascinating to think that if the Neanderthals had reached larger population sizes in Europe, or if modern human populations had grown slower, some of us today would probably carry a lot more Neanderthal ancestry in our genome.”

Source: PLOS news release

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*Juric I, Aeschbacher S, Coop G (2016) The Strength of Selection against Neanderthal Introgression. PLoS Genet 12(11): e1006340. doi:10.1371/journal.pgen.1006340

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 This richly illustrated issue includes the following stories: Recent findings shedding new light on the whereabouts of the remains of Philip of Macedon, father of Alexander the Great; how an archaeologist-sculptor is bringing bones of the dead back to life; archaeologists uncovering town life at the dawn of civilization; an exclusive interview with internationally acclaimed archaeologist James M. Adovasio about what makes the Meadowcroft Rockshelter prominent in the ongoing search for the first Americans; what archaeologists are finding at the site of the ancient city of Gath, the home town of the biblical Philistine giant, Goliath; and how scientists are redrawing the picture of human evolution in Europe.  Find it on Amazon.com.

 

 

  

 

 

 

 

Middle Stone Age ochre processing tools reveal cultural and behavioral complexity

PLOS—Middle Stone Age humans in East Africa may have employed varied techniques to process ochre for functional and symbolic uses, according to a study* published November 2, 2016 in the open-access journal PLOS ONE by Daniela Rosso from the University of Bordeaux, France, and colleagues.

Ochre fragments-which are rocks containing iron oxides, red or yellow in color-have often been found at Middle Stone Age sites and have played a role in shaping the cultures of early African Homo sapiens. Some researchers suggest that ochre was used for utilitarian purposes, for example in glue to adhere handles to tools, whilst others believe that the pigment was used for symbolic purposes, such as body painting or creating meaningful patterns. However, few ochre processing tools have been studied in detail to understand how this material was processed.

The authors of the present study used microscopy, spectroscopy and X-ray techniques to analyze 21 ochre-processing tools and two ochre-stained artifacts from the Porc-Epic Cave, a 40,000-year-old Middle Stone Age site in Ethiopia.

The researchers found that the tools appeared to have been used to process different types of iron-rich rocks. A range of stone types were used as grindstones, producing ochre powder of different color and coarseness, likely employed to suit different functions, revealing a high degree of behavioral complexity. For example, finer powders would be most suitable for body painting, whereas coarser ochre would be suitable for functional uses. One round stone appeared to have been painted or used as a stamp to apply pigment powder to different surfaces. The authors note that this is the first Paleolithic site to provide such comprehensive documentation of ochre processing techniques.

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ochretools

Top left: tool used to grind ochre from the Middle Stone Age levels of Porc-Epic Cave, Dire Dawa, Ethiopia; Top right: residues of ochre on the same object; Bottom left: modified ochre lumps from the same levels; Bottom right: photo of the cave. Courtesy  D.E. Rosso and F. d’Errico

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“This study analyses the largest collection of such tools, found at Porc-Epic Cave, Dire Dawa, Ethiopia, in levels dated at c. 40,000 years ago,” says Rosso. “Ochre processing at Porc-Epic Cave reflects a high degree of behavioral complexity, and represents ochre use that was probably devoted to a variety of functions.”

Source: PLOS press release

If you liked this article, see the premium article in Popular Archaeology about the role of ochre in human evolution

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*Rosso DE, Pitarch Martí A, d’Errico F (2016) Middle Stone Age Ochre Processing and Behavioural Complexity in the Horn of Africa: Evidence from Porc-Epic Cave, Dire Dawa, Ethiopia. PLoS ONE 11(11): e0164793. doi:10.1371/journal.pone.0164793

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winter2016ebookcover

 This richly illustrated issue includes the following stories: Recent findings shedding new light on the whereabouts of the remains of Philip of Macedon, father of Alexander the Great; how an archaeologist-sculptor is bringing bones of the dead back to life; archaeologists uncovering town life at the dawn of civilization; an exclusive interview with internationally acclaimed archaeologist James M. Adovasio about what makes the Meadowcroft Rockshelter prominent in the ongoing search for the first Americans; what archaeologists are finding at the site of the ancient city of Gath, the home town of the biblical Philistine giant, Goliath; and how scientists are redrawing the picture of human evolution in Europe.  Find it on Amazon.com.

 

 

  

 

 

 

 

The Once and Future Cobá

As Founder and Editor of Popular Archaeology Magazine, Dan is a freelance writer and journalist specializing in archaeology.  He studied anthropology and archaeology in undergraduate and graduate school and has been an active participant on archaeological excavations in the U.S. and abroad.  He is the creator and administrator of Archaeological Digs, a popular weblog about archaeological excavation and field school opportunities.  

Cobá, Quintana Roo, Mexico — Enveloped by a natural tropical canopy and set near two lagoons on the Yucatán Peninsula of Mexico, the village of Cobá has been home to a small, quiet community of Maya farmers and other native residents who have made their living for decades from the natural resources such tropical locations could bestow. Best known today for its spectacular Maya ruins, this location once boasted an ancient population of about 55,000 people at its peak between 600 and 900 AD, featuring a complex ancient stone and plaster road or causeway system (sacbeob), linking the ancient city to other smaller ancient sites near and far. At its core were the typical monumental structures characteristic of an ancient Maya metropolis. “The investigations at Cobá mapped approximately 30% of the site between 1974 and 1976, including the core area and the suburban area,” says Dr. Ellen Kintz, an archaeologist with an in-depth knowledge of Coba and who has worked in the area for 40 years. “The site is rich in carved monuments (stelae), ball courts, and murals (in sadly decayed states), but the richness of Cobá is reflected in the housemounds (residential compounds) that showcase the social life of the ancient inhabitants.” Cobá attracts thousands of visitors each year from nearby resort centers like Cancún. It is a popular excursion destination during the tourist season. 

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 Above and below: The ancient ruins of Cobá draw tourists from all over the world, from the nearby resorts. Images courtesy Ellen R. Kintz, Maya Research Program.

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But aside from the ruins, there is another Cobá that garners little attention.

“The village itself is often overlooked,” says Kintz. “While Cobá’s residents [today consisting of 120 families] are skilled artists and craftsmen, tourists tend to ignore the modern village and pass directly to the ruins.”

There are reasons for this. Many of the stores and houses are undeveloped and unpainted, and the streets are poorly maintained. “Many family businesses are set up inside of people’s homes, with little to no indication given to tourists that there are items for sale within the community,” adds Kintz.

Modern Cobá and ancient Cobá thus strike a clear picture of contrasts. Like many small villages and towns across the world that share their space with their overshadowing monumental archaeological remains, Cobá’s state of being falls far short of its promise when it comes to the potential advantages its ancient past could endow its present.  

Kintz, with help from the Maya Research Program (MRP), hopes to change that situation for Cobá. She envisions a Cobá that she believes deserves a renaissance of economic and artistic revitalization.  “Currently, we are hard at work to raise funds for a dramatic transformation of the village’s primary thoroughfare,” she says.  “The roadway [thoroughfare] will be designed as a place for sustainable commerce that will form the backbone of the community’s economic revival.” 

In essence, it will be a new marketplace for promoting the village’s culture and talents to the visiting public. Relying heavily on the input of the residents, a multifaceted plan has already been developed and the villagers are now beginning their work. According to Kintz, it involves, among other things, (1) painting and decorating the houses of 120 families with inspiration from traditional Maya iconography and dress designs; (2) the purchase of tables and chairs for displaying their wares and artistic works along the side of the community road for the visiting public; and (3) creation of new and improved signage to inform and direct visitors to other interesting points of interest within the contemporary village.

“We have estimated that if average tourist spending in Cobá increases by a mere $10 per person, average family income in the village would increase by nearly 20%,” says Kintz. “This would represent a dramatic increase in the villagers’ quality of life, and allow Cobá’s people to begin to secure their own future.” 

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 Above and below: Images of the modern village of Cobá. Courtesy Ellen R. Kintz, Maya Research Program

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If successful, the project will provide one example of how past and present archaeological activity and restoration creates tangible practical benefits for people — in particular, how it can and does improve the lives of local populations throughout the world. 

For more information about the Cobá community development project and how one can contribute, see the website. All donations are tax deductible and go directly to the community of Cobá to assist in achieving their goals under the project.

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50,000 years of history of the European bison traced through ancient DNA

Three bison populations colonized Western Europe via three successive waves, the first between 57,000 and 34,000 years ago when the climate was temperate. During the glaciation period, this first population of ancient wisent was replaced by the steppe bison, the ancestor of the present-day American bison. As shown in paintings from the French Chauvet Cave, both of these two bison types were present in Southern France between 39,000 and 34,000 years ago. When the climate became mild again 14,000 ago, a new wisent population coming from the Southern Caucasus colonized Western Europe. This paleogenomic study* was performed by scientists from the Institut Jacques Monod (CNRS/University Paris Diderot)1 on ca. sixty samples that have been collected by a collaborative international network and whose dates cover the last 50,000 years. The results obtained show that the genetic diversity of bison gradually decreased until their disappearance in the wild in 19182. The study indicates that climatic and environmental changes and human pressure play a major role on the population dynamics of the megafauna, of which the wisent is the biggest representative still alive in Europe. 

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 Bison painting in the Chauvet Cave, France.  Claude Valette, Wikimedia Commons

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Source: CNRS press release

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1  Particularly in collaboration with Jean-Philippe Brugal at laboratory Afrique au Sud du Sahara (CNRS/Ministère des Affaires étrangères) and at Laboratoire méditerranéen de préhistoire Europe-Afrique (CNRS/Aix-Marseille Université/Ministère de Culture et de la Communication) and Malgorzata Tokarska at Mammal Research Institute Polish Academy of Science in Poland.

2  A herd of wild wisent has been reconstituted in Poland from zoo animals.

 

*Past climate changes, population dynamics and the origin of Bison in Europe. Diyendo Massilani, Silvia Guimaraes, Jean-Philip Brugal, E. Andrew Bennett, Malgorzata Tokarska, Rose-Marie Arbogast, Gennady Baryshnikov, Gennady Boeskorov, Jean-Christophe Castel, Sergey Davydov, Stéphane Madelaine, Olivier Putelat, Natalia N. Spasskaya, Hans-Peter Uerpmann, Thierry Grange, Eva-Maria Geigl. BMC Biology, le 21 octobre 2016. DOI : 10.1186/s12915-016-0317-7. https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-016-0317-7

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Upper Paleolithic humans may have hunted cave lions for their pelts

PLOS—Upper Paleolithic humans may have hunted cave lions for their pelts, perhaps contributing to their extinction, according to a study* published October 26, 2016 in the open-access journal PLOS ONE by Marián Cueto from the Universidad de Cantabria, Spain, and colleagues.

The Eurasian cave lion, likely among the largest lion species ever to have lived, became extinct around 14,000 years ago, but the reasons for its disappearance are not clear. Upper Paleolithic humans were previously known to have hunted other small and large carnivores, but archaeological evidence of lion hunting is sparse. To help fill in this gap, Cueto and colleagues examined nine fossilized cave lion toe bones from the Upper Paleolithic cave site of La Garma, in northern Spain, for evidence of cave lion exploitation by humans.

The researchers found that most bones showed signs of having been modified by humans using stone tools, with a specialized technique similar to that used by modern hunters when skinning prey to keep the claws attached to the fur. The authors suggest that the toe bones they analysed may therefore have been part of a single lion pelt, which possibly lay on the floor of the occupied cave. La Garma is known to have been associated with human rituals, and cave lions may have been symbolic animals for Upper Paleolithic humans.

While the analysis is not definitive evidence that Upper Paleolithic humans exploited cave lions for their pelts, the authors speculate that human hunting of cave lions, perhaps as part of ritual activities, might have been a factor in cave lion extinction.

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 Structures of the Zone IV from the Lower Gallery of La Garma.  Credit: Pedro Saura

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Source: PLOS press release

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*Cueto M, Camarós E, Castaños P, Ontañón R, Arias P (2016) Under the Skin of a Lion: Unique Evidence of Upper Paleolithic Exploitation and Use of Cave Lion (Panthera spelaea) from the Lower Gallery of La Garma (Spain). PLoS ONE 11(10): e0163591. doi:10.1371/journal.pone.0163591

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Ancient burials suggestive of blood feuds

UNIVERSITY OF ARIZONA—There is significant variation in how different cultures over time have dealt with the dead. Yet, at a very basic level, funerals in the Sonoran Desert thousands of years ago were similar to what they are today. Bodies of the deceased were buried respectfully, while families and mourners followed certain customs to honor lives lost.

At least, most of the time.

In some cases, however, the dead received far less reverential treatment. Instead, bodies were tossed haphazardly, headfirst, into their eternal resting place, sometimes sustaining post-mortem injuries on top of an often already violent death.

These atypical burials are of interest to University of Arizona bioarchaeologist James Watson, whose study of ancient graves is providing new insight into the social and biological factors that might have motivated violent killings and statement-making burials in the Southwest’s Early Agricultural Period, and how some of the same factors may still be relevant today.

Watson’s new research, which analyzed a series of atypical burial sites in the southwestern United States and northwestern Mexico between 2100 B.C. and A.D. 50, is published in the journal Current Anthropology. It was co-authored by UA anthropology doctoral student Danielle O. Phelps.

The burials Watson analyzed showed evidence of a violent end; skeletal remains often included broken bones or projectile points indicating a shooting death. Yet the position of the bodies in their graves was the most telling. Awkwardly splayed or deposited in the ground headfirst, they clearly were not given customary burial treatment, in which they would have been arranged in a flexed position on their sides. The burials also lacked other standard funerary features of the time, which would have been present had the bodies been interred by family members.

“These people were buried very differently than the rest of the community, and we’re trying to understand why that is,” said Watson, UA associate professor of anthropology and associate director and associate curator at the Arizona State Museum. “We’re arguing that the way they were tossed into these pits is a form of continued desecration of the body. It’s moving from violence on the living individual, through to the process of death, to violence on the corpse.”

So-called atypical burials often are associated with victims of “bad deaths”—deaths described as unnatural, unplanned or “evil” in nature, Watson said. A common theory in the geographical area where Watson works is that the bodies belong to those accused of witchcraft. Yet, given that the corpses were not dismembered in the way suspected witches’ historically were, Watson offers an alternative explanation.

In his paper, he argues that these bodies may have been the victims of blood feuds, or family feuds, during a time when the population was experiencing some serious growing pains. He further suggests that the violence of these ongoing blood feuds may have become enculturated, or ingrained, in certain communities.

“This was right when agriculture came into the area, and these were the earliest villages, so we think that some of this violence comes from growing pains, as villages are established and people are claiming territory and farming the desert river valleys,” Watson said. “Social tensions develop between communities, or even within communities, and end up boiling over into violence.”

At the root of that violence may be a desire to win prestige, which in turn has important biological implications, even though the perpetrator of violence may not be consciously thinking about those implications, Watson said.

“Prestige has a potential to confer biological benefits, in the sense that you can gain access to power and wealth, including wives, and have more offspring, so there is a level of biological fitness there,” he said.

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 Bodies buried by family members were arranged in a flexed position on their side (left), while in atypical burials, bodies were left in more awkward positions (right).  Illustration by Caitlin McPherson

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But why the brutal handling of bodies after death?

Watson uses evolutionary biology’s “costly signaling theory” to explain what might be behind the ruthless post-mortem treatment.

Costly signaling theory is the idea that all animals exhibit certain behaviors and physical traits that are simultaneously advantageous and risky. For example, male birds often have colorful plumage to attract females, which is biologically beneficial, as it will result in more offspring. At the same time, the bright feathers could be costly, as they also make the birds more visible to predators.

Watson suggests that violent killings followed by disrespectful burials similarly send a strong signal—one asserting power and dominance. This signal has the potential benefit of attracting prestige, and the wives and children that come with it, but it also comes with significant risk of retaliation by the victim’s family.

“By creating these atypical burials—where they’re basically desecrating the bodies of the people killed — they’re signaling their prowess to gain status, but it’s at a very significant potential cost, and that is either their life or lives in their community or family,” Watson said.

While Watson’s work focuses on violence that occurred 2,000 to 4,000 years in the past, he suggests costly signaling theory might also be applied in the context of modern-day violence.

“With some of the issues that we’re seeing today—like increased violence and murders in a lot of cities, police shootings, retaliation upon police—a lot of kids are growing up in a culture of violence in certain communities, and they’re learning different values on how to interact with their environment because of the disadvantages that they have,” Watson said. “They gain status because they’re good at being violent; that’s how you gain respect, then along with that comes advantages—wealth, women and offspring, potentially. There is a biological imperative to signal that they are worthy of the status they’re trying to earn.”

Source: University of Arizona press release

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Origins of Remote Oceania settlers

Analyzing seafaring strategies and climate impacts on ocean travel can help researchers reconstruct how humans populated one of the most remote places on Earth, according to a study*. Around 3,400 years ago, humans began crossing the Pacific Ocean to settle Remote Oceania, the far-flung collection of islands that includes Tonga, Samoa, and islands in Micronesia. Although archaeological, linguistic, and genetic evidence delimits the time of arrival of many settlers, the origins of these earliest inhabitants have proven difficult to establish. Alvaro Montenegro and colleagues analyzed ocean routes across the Pacific using computer seafaring simulations primed with high-resolution data for winds, ocean currents, precipitation, and land distribution. Additionally, accounting for the influence of the El Niño Southern Oscillation, the authors constructed “shortest-hop” trajectories to identify the most likely port of departure for the inhabitants of five major regions in Remote Oceania. Among other findings, the analysis suggests that the settlers of western Micronesia originated from a location near the Maluku Islands. The authors also compare their results with a number of previously proposed migration scenarios such as “Slow Boat to the Bismarcks,” “Voyaging Corridor Triple I,” and “Mobile Founding Migrant.” The findings demonstrate the need to incorporate Pacific Islander voyaging strategies and the impact of environmental variables on ocean travel into the analysis of colonization in Remote Oceania, according to the authors.

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 View of Kahlap islet, Mwoakilloa atoll, Eastern Caroline Islands, Micronesia.  Image courtesy of Aaron S. Poteate (North Carolina Museum of Natural Sciences, Raleigh, NC)

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 Shell adze from Mwoakilloa atoll, Eastern Caroline Islands, Micronesia.  Image courtesy of Aaron S. Poteate (North Carolina Museum of Natural Sciences, Raleigh, NC)

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Source: PNAS press release

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*“Using seafaring simulations and shortest-hop trajectories to model the prehistoric colonization of Remote Oceania” by Alvaro Montenegro, Richard Callaghan, and Scott M. Fitzpatrick.

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Study finds earliest evidence in fossil record for right-handedness

UNIVERSITY OF KANSAS – LAWRENCE—Perhaps the bias against left-handers dates back much further than we thought.

By examining striations on teeth of a Homo habilis fossil, a new discovery led by a University of Kansas researcher has found the earliest evidence for right-handedness in the fossil record dating back 1.8 million years.

“We think that tells us something further about lateralization of the brain,” said David Frayer, a KU professor emeritus of anthropology and the lead author of the study. “We already know that Homo habilis had brain lateralization and was more like us than like apes. This extends it to handedness, which is key.”

The findings were published online this week in the prestigious Journal of Human Evolution. The researchers made the discovery after analyzing small cut marks, or labial striations, which are the lip side of the anterior teeth in an intact upper jaw fossil, known as OH-65, found in a stream channel of the Olduvai Gorge in Tanzania.

Frayer said among the network of deep striations found only on the lip face of the upper front teeth most cut marks veered from left down to the right. Analysis of the marks makes it likely they came from when OH-65 used a tool with its right hand to cut food it was holding in its mouth while pulling with the left hand. The scratches can be seen with the naked eye, but a microscope was used to determine their alignment and to quantify their angulation.

“Experimental work has shown these scratches were most likely produced when a stone tool was used to process material gripped between the anterior teeth and the tool occasionally struck the labial face leaving a permanent mark on the tooth’s surface,” Frayer said.

Based on the direction of the marks, it’s evident the Homo habilis was right-handed. It’s a sample of one, but because this is the first potential evidence of a dominant handed pre-Neanderthal, Frayer said, the study could lead to a search for the marks in other early Homo fossils.

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homohabilisteeth

David Frayer, KU professor emeritus of anthropology, is lead author on a recent study published in the Journal of Human Evolution that found striations on teeth of a Homo habilis fossil 1.8 million years old moved from left to right, indicating the earliest evidence in the fossil record for right-handedness. Researchers believe the marks came from using a tool to try to cut food being pulled from the mouth with the left hand.  Credit: David Frayer

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“Handedness and language are controlled by different genetic systems, but there is a weak relationship between the two because both functions originate on the left side of the brain,” he said. “One specimen does not make an incontrovertible case, but as more research is done and more discoveries are made, we predict that right-handedness, cortical reorganization and language capacity will be shown to be important components in the origin of our genus.”

Multiple lines of research point to the likelihood that brain reorganization, the use of tools and use of a dominant hand occurred early in the human lineage. Today, researchers estimate that 90 percent of humans are right-handed, and this differs from apes which are closer to a 50-50 ratio. Until now, no one looked for directionality of striations in the earliest specimens representing our evolutionary lineage.

“We think we have the evidence for brain lateralization, handedness and possibly language, so maybe it all fits together in one picture,” Frayer said.

Source: University of Kansas, Lawrence, press release

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Co-authors of the study were Ronald J. Clarke, Evolutionary Studies Institute at the University of Witwatersrand, Johannesburg, South Africa; Ivana Fiore and Luca Bondioli, Polo Museale del Lazio, Museo Nazionale Preistorico Etnografico; L. Pigorini, Rome, Italy; Robert J. Blumenschine, Paleontological Scientific Trust, Johannesburg, South Africa, Alejandro Pérez-Pérez, Laura M. Martinez and Ferran Estebaranz, Department on Animal Biology, University of Barcelona, Barcelona, Spain and Ralph Holloway, Department of Anthropology, Columbia University, New York.

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Ancient human history more complex than previously thought, researchers say

AMERICAN SOCIETY OF HUMAN GENETICS—BETHESDA, MD – Relationships between the ancestors of modern humans and other archaic populations such as Neanderthals and Denisovans were likely more complex than previously thought, involving interbreeding within and outside Africa, according to a new estimator developed by geneticists. Findings were reported at the American Society of Human Genetics (ASHG) 2016 Annual Meeting in Vancouver, B.C.*

In recent years, genetics has led to the revision of many assumptions about archaic populations, explained Ryan J. Bohlender, PhD, a postdoctoral researcher at the University of Texas MD Anderson Cancer Center and first author on the research. For example, the 2010 release of the Neanderthal genome led to the discovery that Neanderthals and the ancestors of modern Europeans interbred. A few years later, scientists discovered the existence of Denisovans, a population known of only through genetics, through a fossilized sample of DNA.

“My colleagues and I set out to find out what we might share with these ancient populations and how our histories interacted,” Dr. Bohlender said. They developed an estimation tool to model these interactions based on parameters such as current estimates of population size and dates when populations separated – how long ago they stopped interbreeding – and look for inconsistencies with information known from genetic studies about the overlap between the modern human genome and those of ancient populations. Compared to previous estimators, this one made increased use of genetic data to cut down on statistical bias. The researchers then allowed estimates of population size and separation dates to vary in a series of simulations, in order to find out if adjusting these parameters better fit the genetic data.

“Using this process, we found that the population in Africa was likely about 50 percent larger than previously thought. We also found that an archaic-modern human separation date of 440,000 years ago was the best fit, suggesting that Neanderthals diverged from our lineage 100,000 years more recently than we thought,” Dr. Bohlender said. “We got the same separation date using data from multiple modern human populations, which is a good sign.”

In addition, their results suggest that throughout Eurasia, ancient populations interbred less than previously believed, and that – contrary to previous findings – the level of mixing with Neanderthals did not differ significantly between Europe and East Asia.

The findings bring up many new questions, including to what extent the new estimator can be trusted, why it produces results that differ from prevailing estimates, and how to reconcile these differences.

“Overall, our findings confirm the human family tree is more complicated than we think it is,” Dr. Bohlender said. “For example, other archaic populations are likely to have existed, like the Denisovans, who we didn’t know about except through genetics.” They plan to try out simulations with multiple other populations, to see if this adds some clarity to the results.

Dr. Bohlender also believes that more detailed studies of African populations may shed some light. “Africans have been underrepresented in genetics research – they’re not as well studied as European and Asian populations, yet they are more diverse genetically than any other group,” he said.

Source: American Society of Human Genetics press release

Cover Image, Top Left: DNA Extraction in the lab – Image from U.S. Fish and Wildlife Service — Northeast Region

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*Bohlender R et al. (2016 Oct 20). A complex history of archaic admixture in modern humans. Presented at the American Society of Human Genetics 2016 Annual Meeting. Vancouver, B.C., Canada.

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Archaeologists use drones to trial virtual reality

AUSTRALIAN NATIONAL UNIVERSITY—Archaeologists at The Australian National University (ANU) and Monash University are conducting a trial of new technology to build a 3D virtual-reality map of one of Asia’s most mysterious sites – the Plain of Jars in Laos.

Researcher Dr Dougald O’Reilly from the ANU School of Archaeology and Anthropology said the technology, known as CAVE2™ and based out of Monash University, uses drone footage to create a virtual replica of archaeology dig sites.

“On top of mapping the three dig sites, we are doing the entire Plain of Jars landscape,” Dr O’Reilly said.

“A drone captures a set of 3D images every 10 centimetres and this data is put into a digital mould.

“You put on a headset and the virtual model feels like you’re standing and walking around the site. As you move around the image moves as if you are at the location.”

Ground penetrating radar was also used to identify a burial which researchers then excavated. That data was also fed into CAVE2™ to create a 3D underground view.

Dr O’Reilly said it was possible for the technology to be adapted to smartphones, or to do 3D printing of the digital models.

“It provides easy access to remote faraway places. Theoretically you could use the headset with your phone to visit a 3D map of any location,” he said.

“You could print a life-sized version of any CAVE2™ model. You could use them in museums rather than disrupting the archeologically record by moving artefacts.”

Dr O’Reilly said the technology could be a great benefit to the field of archaeology.

“It allows you to revisit the site. Even right now I’m using it to look at the positioning of some of the materials I’m having radio-carbon dated,” he said.

“In terms of heritage preservation it’s a useful tool. If you want to monitor the change in heritage sites through time you have that data.”

The Plain of Jars was chosen as a test site for CAVE2™ due to the current application to have the site listed as a UNESCO World Heritage site.

The Plain of Jars dig project in central Laos is the first major archaeological dig at the site since the 1930s. The landscape features ancient carved stone jars up to three metres tall, their purpose remains a mystery.

The site features a number of the large stone jars for which the site is named, as well as a big sandstone disk and large quartz stones.

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 Archaeology at work at the Plain of Jars. Credit: ANU

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A primary burial at the Plain of Jars site. Credit: ANU 

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The project was jointly led by Dr O’Reilly and Dr Louise Shewan, Monash University.

Dr Shewan said the technology will become useful for investigating sites that are not accessible for traditional archaeological methods, due to issues such as unexploded land mines.

“Of the over 80 known jar sites in Laos, only seven have been cleared of explosives,” she said.

Source: Australian National University press release

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Extensive heat treatment in Middle Stone Age silcrete tool production in South Africa

PLOS—Humans living in South Africa in the Middle Stone Age may have used advanced heating techniques to produce silcrete blades, according to a study published October 19, 2016 in the open-access journal PLOS ONE by Anne Delagnes from the CNRS (PACEA – University of Bordeaux, France) and colleagues.

Middle Stone Age humans in South Africa developed intentional heat treatment of silcrete rock over 70,000 years ago to facilitate the flaking process by modifying the rock properties – the first evidence of a transformative technology. However, the exact role of this important development in the Middle Stone Age technological repertoire was not previously clear. Delagnes and colleagues addressed this issue by using a novel non-destructive approach to analyze the heating technique used in the production of silcrete artifacts at Klipdrift Shelter, a recently discovered Middle Stone Age site located on the southern Cape of South Africa, including unheated and heat-treated comparable silcrete samples from 31 locations around the site.

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Humans living in South Africa in the Middle Stone Age may have used advanced heating techniques to produce silcrete blades, according to a study published Oct. 19, 2016 in the open-access journal PLOS ONE by Anne Delagnes from the CNRS (PACEA – University of Bordeaux, France) and colleagues.  Credit:  Delagnes et al (2016)

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The authors noted intentional and extensive heat treatment of over 90% of the silcrete, highlighting the important role this played in silcrete blade production. The heating step appeared to occur early during the blade production process, at an early reduction stage where stone was flaked away to shape the silcrete core. The hardening, toughening effect of the heating step would therefore have impacted all subsequent stages of silcrete tool production and use.

The authors suggest that silcrete heat treatment at the Klipdrift Shelter may provide the first direct evidence of the intentional and extensive use of fire applied to a whole lithic chain of production. Along with other fire-based activities, intentional heat treatment was a major asset for Middle Stone Age humans in southern Africa, and has no known contemporaneous equivalent elsewhere.

Source: PLOS press release

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*Delagnes A, Schmidt P, Douze K, Wurz S, Bellot-Gurlet L, Conard NJ, et al. (2016) Early Evidence for the Extensive Heat Treatment of Silcrete in the Howiesons Poort at Klipdrift Shelter (Layer PBD, 65 ka), South Africa. PLoS ONE 11(10): e0163874. doi:10.1371/journal.pone.0163874

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Monkeys are seen making stone flakes

UNIVERSITY OF OXFORD—Researchers have observed wild-bearded capuchin monkeys in Brazil deliberately break stones, unintentionally creating flakes that share many of the characteristics of those produced by early Stone Age hominins. The difference is that the capuchins’ flakes are not intentional tools for cutting and scraping, but seem to be the by-product of hammering or ‘percussive behaviour’ that the monkeys engage in to extract minerals or lichen from the stones.

In a paper, published in Nature, the research team says this finding is significant because archaeologists had always understood that the production of multiple stone flakes with characteristics such as conchoidal fractures and sharp cutting edges was a behaviour unique to hominins. The paper suggests that scholars may have to refine their criteria for identifying intentionally produced early stone flakes made by hominins, given capuchins have been observed unintentionally making similar tools.

The research is authored by researchers from the University of Oxford, University College London and University of São Paulo in Brazil. The team observed individual monkeys in Serra da Capivara National Park unintentionally creating fractured flakes and cores. While hominins made stone flake tools for cutting and butchery tasks, the researchers admit that it is unclear why monkeys perform this behaviour. They suggest that the capuchins may be trying to extract powdered silicon (known to be an essential trace nutrient) or to remove lichen for some as yet unknown medicinal purpose. At no point did the monkeys try to cut or scrape using the flakes, says the study.

Lead author Dr Tomos Proffitt, from the School of Archaeology at the University of Oxford, comments: ‘Within the last decade, studies have shown that the use and intentional production of sharp-edged flakes are not necessarily linked to early humans (the genusHomo) who are our direct relatives, but instead were used and produced by a wider range of hominins. However, this study goes one step further in showing that modern primates can produce archaeologically identifiable flakes and cores with features that we thought were unique to hominins.

‘This does not mean that the earliest archaeological material in East Africa was not made by hominins. It does, however, raise interesting questions about the possible ways this stone tool technology developed before the earliest examples in the archaeological record appeared. It also tells us what this stone tool technology might look like. There are important questions too about the uniqueness of early hominin behaviour. These findings challenge previous ideas about the minimum level of cognitive and morphological complexity required to produce numerous conchoidal flakes.’

The monkeys were observed engaging in ‘stone on stone percussion’, whereby they individually selected rounded quartzite cobbles and then using one or two hands struck the ‘hammer-stone’ forcefully and repeatedly on quartzite cobbles embedded in a cliff face. This action crushed the surface and dislodged cobbled stones, and the hand-held ‘hammer stones’ became unintentionally fractured, leaving an identifiable primate archaeological record. As well as using the active hammer-stone to crush ‘passive hammers’ (stones embedded in the outcrop), the capuchins were also observed re-using broken hammer-stones as ‘fresh’ hammers.

The research team examined 111 fragmented stones collected from the ground immediately after the capuchins had dropped them, as well as from the surface and excavated areas in the site. They gathered complete and broken hammer-stones, complete and fragmented flakes and passive hammers. Around half of the fractured flakes exhibited conchoidal fracture, which is typically associated with the hominin production of flakes.

Bearded capuchins and some Japanese macaques are known to pound stones directly against each other, but the paper remarks that the capuchins in Serra da Capivara National Park are the only wild primates to be observed doing this for the purpose of damaging the stones.

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capuchin

 Wild-bearded capuchin monkey in Serra da Capivara National Park, Brazil, unintentionally creating fractured flakes and cores. Credit: Michael Haslam/ Primate Archaeology Group

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Co-author and leader of the Primate Archaeology (Primarch) project Michael Haslam, from the University of Oxford, says: ‘Our understanding of the new technologies adopted by our early ancestors helps shape our view of human evolution. The emergence of sharp-edged stone tools that were fashioned and hammered to create a cutting tool was a big part of that story. The fact that we have discovered monkeys can produce the same result does throw a bit of a spanner in the works in our thinking on evolutionary behaviour and how we attribute such artefacts. While humans are not unique in making this technology, the manner in which they used them is still very different to what the monkeys seem capable of.’

Source: University of Oxford press release

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The Higgs Bison: Mystery species hidden in cave art

UNIVERSITY OF ADELAIDE—Ancient DNA research has revealed that Ice Age cave artists recorded a previously unknown hybrid species of bison and cattle in great detail on cave walls more than 15,000 years ago.

The mystery species, known affectionately by the researchers as the Higgs Bison* because of its elusive nature, originated over 120,000 years ago through the hybridisation of the extinct Aurochs (the ancestor of modern cattle) and the Ice Age Steppe Bison, which ranged across the cold grasslands from Europe to Mexico.

Research led by the Australian Centre for Ancient DNA (ACAD) at the University of Adelaide, published today in Nature Communications, has revealed that the mystery hybrid species eventually became the ancestor of the modern European bison, or wisent, which survives in protected reserves such as the Bia?owie?a forest between Poland and Belarus.

“Finding that a hybridization event led to a completely new species was a real surprise – as this isn’t really meant to happen in mammals,” says study leader Professor Alan Cooper, ACAD Director. “The genetic signals from the ancient bison bones were very odd, but we weren’t quite sure a species really existed – so we referred to it as the Higgs Bison.”

The international team of researchers also included the University of California, Santa Cruz (UCSC), Polish bison conservation researchers, and palaeontologists across Europe and Russia. They studied ancient DNA extracted from radiocarbon-dated bones and teeth found in caves across Europe, the Urals, and the Caucasus to trace the genetic history of the populations.

They found a distinctive genetic signal from many fossil bison bones, which was quite different from the European bison or any other known species.

Radiocarbon dating showed that the mystery species dominated the European record for thousands of years at several points, but alternated over time with the Steppe bison, which had previously been considered the only bison species present in Late Ice Age Europe.

“The dated bones revealed that our new species and the Steppe Bison swapped dominance in Europe several times, in concert with major environmental changes caused by climate change,” says lead author Dr Julien Soubrier, from the University of Adelaide. “When we asked, French cave researchers told us that there were indeed two distinct forms of bison art in Ice Age caves, and it turns out their ages match those of the different species. We’d never have guessed the cave artists had helpfully painted pictures of both species for us.”

The cave paintings depict bison with either long horns and large forequarters (more like the American bison, which is descended from the Steppe bison) or with shorter horns and small humps, more similar to modern European bison.

“Once formed, the new hybrid species seems to have successfully carved out a niche on the landscape, and kept to itself genetically,” says Professor Cooper. “It dominated during colder tundra-like periods, without warm summers, and was the largest European species to survive the megafaunal extinctions. However, the modern European bison looks genetically quite different as it went through a genetic bottleneck of only 12 individuals in the 1920s, when it almost became extinct. That’s why the ancient form looked so much like a new species.”

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higgsbison1

 A reproduction of a putative wisent painted in the Marsoulas cave (Haute-Garonne, France) during the the Magdalenian period.  Courtesy Carole Fritz

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higgsbison2

 A black charcoal drawing of steppe bison (Bison priscus) from the Aurignacian period — Chauvet-Pont d’Arc cave (Ardeche, France)  Courtesy Carole Fritz

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higgsbison3

Bison left metacarpal subfossil (front toe, anterior and posterior faces) from l’Aven de l’Arquet (Barjac, France) radiocarbon dated to >50,000 years ago. DNA analysis of the bone showed that this bison belonged to the newly discovered group of extinct wisent (cladeX). Collection of Musée de Préhistoire d’Orgnac (France), Evelyne Crégut-Bonnoure, Jean-Philip Brugal. Photo from Julien Soubrier 

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Professor Beth Shapiro, UCSC, first detected the mystery bison as part of her PhD research with Professor Cooper at the University of Oxford in 2001. “Fifteen years later it’s great to finally get to the full story out. It’s certainly been a long road, with a surprising number of twists,” Professor Shapiro says.

Source: University of Adelaide press release

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*The Higgs Boson is a subatomic particle suspected to exist since the 1960s and only confirmed in 2012.

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Ancient hominid ‘hanky panky’ also influenced spread of STIs

MOLECULAR BIOLOGY AND EVOLUTION (OXFORD UNIVERSITY PRESS)—With recent studies proving that almost everyone has a little bit of Neanderthal DNA in them—-up to 5 percent of the human genome— it’s become clear our ancestors not only had some serious hominid ‘hanky panky’ going on, but with it, a potential downside: the spread of sexually transmitted infections, or STIs.

For wherever life goes, germs are soon to follow.

In the case of the most common STI, human papillomaviruses (HPVs), almost everyone hosts a number of infections, with strain HPV16 responsible for most cervical and oral cancers.

By reconstructing the ancestry and timing of the family tree of HPV16 in greater detail than ever before, and by comparing the evolutionary histories of viruses and humans, a new pattern has emerged. Now, researchers have generated compelling evidence that HPV16 co-diverged with archaic and modern humans—only to be repopulated at a much later date through their contact by Neanderthals, challenging the assumption that HPV16 co-evolved with modern humans. The study, by Ville Pimenoff at the Catalan Institute of Oncology and Ignacio Bravo at the French National Center for Scientific Research was published in the advanced online edition of Molecular Biology and Evolution (DOI: 10.1093/molbev/msw214).

During the evolution of HPV16, variants A and B/C/D co-diverged with archaic and modern humans, respectively. When populations of modern humans left Africa and had sexual intercourse with Neanderthals and Denisovans, they were infected by the viral variant that had evolved with archaic humans, and this virus thrived and expanded among modern humans

This scenario finally explains unsolved questions: why human diversity is largest in Africa, while HPV16 diversity is largest in East-Asia, and why the HPV16A variant is virtually absent in Sub-Saharan Africa while it is by far the most common one in the rest world.

“Oncogenic viruses are very ancient,” said Ignacio Bravo. “The history of humans is also the history of the viruses we carry and we inherit. Our work suggests that some aggressive oncogenic viruses were transmitted by sexual contact from archaic to modern humans.”

They propose that interactions between the host and viral genomes may explain why most humans are exposed to HPVs and cure the infection, while in a few unfortunate cases the infection persists and can lead to cancer. The different degree of archaic ancestry in our genomes could be partly responsible for differential susceptibility to cancer. Since HPVs do not infect bones, current Neanderthal and Denisovan genomes do not contain HPVs. As a next step, the authors hope to trace HPVs sequences in ancient human skin remains as a more direct test of their hypothesis.

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Cro-Magnon120

 Cover image: The original “Old man of Cro-Magnon”, Musée de l’Homme, Paris.  120, Wikimedia Commons

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Source: Oxford University press release

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